Hunstman Cancer Institute Logo
School of Medicine Logo

Comprehensive Oncology Data and Engineering - CODE icon

  • App Launch
  • App Info
  • App Training
  • About Us
  • FAQs
  • Acknowledgement
  • Resources
  • CODE - Comprehensive Oncology Data & Engineering
  • Help Docs
  • itBioPath
  • Transformations
Launch itBioPath App
  • Navigation
    • Welcome
    • Use case
    • Getting Started
      • Introduction
      • Operating the itBioPath Interface
      • Keyboard Shortcuts
      • Search Pane
    • Searching Records
      • Performing a Basic Search
      • Performing an Advanced Search
      • Performing a List Search
      • Performing a Keyword Search of UUMC Pathology Reports for all Patients in the Database
      • Performing a Keyword Search of UUMC Pathology Reports for the Patients Associated with a Specific Set of Specimens
      • Restrictions on Searches
    • Reports
      • iQ Reports
      • Custom Reports
      • Working with Grids
    • iQ Tool
      • Adding Columns to a Query
      • Starting the iQ Tool
      • iQ Tool Window
      • Current Query Data Group
      • Saved Queries List
      • Top Portion of the Selected
      • Display or Report Columns Section
      • Find/Filters Section
      • Running a Preexisting Query
      • Creating a Query
      • Create Query Window
      • Copying and Altering a Preexisting Query
      • Removing Columns from a Query
      • Editing Column Parameters in a Query
      • Changing the Order of Columns in a Query
      • Adding Filters to a Query
      • Editing Filters in a Query
      • Ways of Comparing Data
      • Removing Filters From a Query
      • Results Window
      • Application Data Structure
      • Application Database Fields Alphabetical List
      • Application Datatree
      • Field Paths List for the iQ Tool
    • Adding Specimens to the Database
      • Adding a Single Specimen using the Add Specimen Wizard
      • Adding a Batch of Specimens using the Add Specimen Expert Tool
      • Saving a Batch of Specimens to be added as a Work in Progress
      • Finishing a Work in Progress Batch
      • Printing Barcodes for a Specimens in a Batch added using the Add Specimen Expert Tool
      • Customizing the Add Specimen Expert Tool to Streamline Specimen Batch Entry
      • Changing which Box an Add Expert Template Points for Adding Storage
      • Importing FFPE Samples from UUMC
    • Entering and Editing Specimen Records
      • Editing Specimen Records
      • Adding Aliquots
      • Adding a New Box to a Freezer
      • Editing an Aliquot
      • Barcoding
      • Removing an Aliquot from a Specimen Record
      • Changing Which Collection a Specimen Record Belongs to
      • Changing the Patient That a Specimen Record is Linked to
    • Transformations
      • Managing Specimen Transformations
      • Transforming a Specimen
      • Performing a Transformation on a Batch of Aliquots
    • Specimen Disbursement and Registration
      • Disbursing a Single Specimen
      • Recording the Shipment of a Disbursed Specimen
      • Registering a Single Specimen to a Project
      • Batch Disbursement
      • Creating a New Shipment Record from the Search Shipment Window
      • Editing an Existing Shipment Record
      • Batch Specimen Registration
      • Shipping an Entire Box
    • Reports and Records
    • Adding a Pathology Report to a Specimen Record
    • Performing a DEXT Import of a Pathology Import
    • Checking on the status of your DEXT Import Request
    • Adding a Medical Record to a Specimen Record
    • Editing Patient or Collection Records
    • Editing Collection Records
    • Editing Patient Records
    • Diagnoses
    • Adding a Diagnosis to a Patient Record
    • Linking an Existing Diagnosis to one or more Collections
    • Linking a Collection to a Diagnosis
    • Recording a Consent for a Patient
    • Reviewing a Patient's Consents
    • Uploading a Patient's Consent Form
    • Managing Patient Consents
      • Adding a Consent
      • Uploading a Consent Form
      • Reviewing a Consent
    • External (to itBioPath) Data Sources
      • Accessing UUMC Pathology Records for a Patient
      • Accessing a Patient's UUMC Records that are not Pathology Reports
      • Accessing a Patient's Tumor Registry Records
    • Managing Dictionaries
    • Storage
      • Editing Aliquots
      • Connecting a Barcode Label Printer to itBioPath
      • Removing a Barcode Label Printer from itBioPath
      • Freezer Management
      • Viewing the Contents of a Box in a Freezer
      • Accessing the Specimen Record for the Specimen associated with an Aliquot
      • Editing Box Details
      • Adding a New Box to a Freezer from the Add Aliquot Window
    • Managing Protocols, Projects, and Related User Permissions
      • Adding a Protocol or Project
      • Marking a Protocol or Project Inactive
      • Removing a Protocol or Project
      • Granting a User Permissions Relative to a Protocol or Project
    • Window, Tab, and Field Descriptions
      • The Specimen Window
    • Miscellaneous
      • Frequently Asked Questions
      • Password Protected Screen Saver
      • Terms of Service
      • Program Policies
  • Managing Specimen Transformations
  • Transforming a Specimen
  • Performing a Transformation on a Batch of Aliquots

NEWS

article image

RISR is now CODE
Click for more info.

Click here to check out the New-&-Improved iQ. It has recently been converted to an Angular format.

Data Resources available to you at HCI are outlined in this new HCI Data Resources Brochure. Click for the PDF file.

article image

article image

RISR is now CODE
Click for more info.

Click here to check out the New-&-Improved iQ. It has recently been converted to an Angular format.

Data Resources available to you at HCI are outlined in this new HCI Data Resources Brochure. Click for the PDF file.

article image

article image

CODE Open Office Hours

Held Virtually 1-2 pm every Thursday.
Must Join via the Teams application (not through a browser).
Click Join Teams Meeting

Contact Us

I Need CODE - Comprehensive Oncology Data & Engineering
(Application & Query) Support

If you need Desktop/Computer Support, click here for HCIIT
(formerly CATG)

CODE Shared Resource
Director

Andrew Post, MD, PhD
Andrew.Post@hci.utah.edu
801-585-0600

CODE Shared Resource
Associate Director

Shirleen Hewitt, DBA, MBA
Shirleen.Hewitt@hci.utah.edu
801-585-5972

Governance

HCI Senior Director Oversight
Aik Choon Tan, PhD

Faculty Advisory Committee Chair
Aik Choon Tan, PhD

Faculty Advisory Committee Members
HCI Research Executive Committee

Huntsman Cancer Institute

2000 Circle of Hope Dr., Salt Lake City, UT 84112
801-585-0303

Quick Links

  • Webmaster
  • Disclaimer
  • Privacy
U-Health logo