To perform a natural language analysis import from an ITS Pathology Report record to a new Pathology Record in HCI’s databases:

  • Open the specimen record to add the pathology record.
  • Select the Path Reports tab.

pathreportstab

  • ClickScreen Shot 2015-05-21 at 11.02.08 AM (1)above the Pathology Reports list. The Add/Link Pathology Report window will open.

addpathreportbutton

  • Select the DEXT tab on that window.

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  • Select an ITS report to import in the list at the top of the window. (The report will be identified by its SPR number and date.)

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  • Select the appropriate Tissue Type in the field in the lower left corner of the window. The tissue type is used to identify natural language processing script that will be used to populate the database fields in the Path Report record.
    • If the appropriate Tissue Type does not appear as an option in the drop-down field, a script has not yet been created to perform a natural language processing import of this kind of pathology report. The data will need to be entered manually using some of the other tools that are available to pathology report entry. Contact Research Informatics about the possibility of developing new DEXT natural language processing scripts.
  • ClickScreen Shot 2015-06-02 at 12.14.11 PMin the lower right corner of the window. The import will not happen immediately. DEXT imports are run in nightly batches.

    • To check on the status of a scheduled DEXT import, clickScreen Shot 2015-06-02 at 12.15.11 PMin the lower left corner of the window. A new window will open.

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  • Select a date range and clickScreen Shot 2015-06-02 at 12.15.03 PM. If the report is not yet available for importing, the DEXT script will continue to attempt to import the record until it becomes available.

  • Once the DEXT import has taken place, verify the data in the pathology report record to ensure the results of the import are accurate. Select File-Mark as Reviewed (DEXT) in the menu bar of the Path Report Detail window for the pathology report to indicate that the import has been properly reviewed.

Contact Us

Research Informatics Director
Andrew Post, MD, PhD
Andrew.Post@hci.utah.edu
801-585-0600

Research Informatics Associate Director
Shirleen Hewitt, DBA
Shirleen.Hewitt@hci.utah.edu
801-585-5972

Governance

HCI Senior Director Oversight
Aik Choon Tan, PhD

Faculty Advisory Committee Chair
Aik Choon Tan, PhD

Faculty Advisory Committee Members
HCI Research Executive Committee