- Welcome
- Introduction
- Publications and presentations
- Signing in
- System requirements
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How To
- Logging into GNomEx
- Submitting an experiment request
- Submitting a microarray hybridization request
- Submitting a sample quality request
- Submitting a sequencing request
- Requesting that microarray hybridization or sequencing be performed on samples previously submitted to sample quality testing
- Adding lanes to a previously submitted sequencing request
- Registering an external experiment in GNomEx
- Finding and viewing a summary of an experiment
- Editing an experiment
- Downloading experiment results
- Linking the samples from an experiment to their BST sample
- Viewing analyses
- Downloading analyzed data files
- Viewing a description of the materials and the methods used during processing of a specific kind of experiment
- Performing a search for experiments and analyses meeting a specific type of criteria
- Submitting a work authorization
- How pricing and billing works in GNomEx
- Adding a new price criterion
- Creating a new price sheet
- Creating a new price category
- Modifying an existing price sheet
- Modifying an existing price category
- Modifying an existing charge item
- Preparing and sending out invoices for clients
- Generating general ledger interface data for automatically billing university accounts
- Window, Tab, and Field Descriptions
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GNomEx Error Messages and Information Windows
- Are you sure you want to delete all the hybridizations?
- Are you sure you want to delete all of the samples?
- At least one non-empty file must be selected in order for download to proceed.
- Please enter all of the required fields for the hybridization.
- Please enter all required fields for the samples.
- Please enter at least one search criterion.
- Please select a price category.
- Please select a price sheet.
- Remove all hybs currently showing in the list?
- Remove all samples currently showing in the list?
- The number of samples to setup has changed. Do you want to clear out the existing samples?
- The request has not been saved. Are you sure you want to quit?
- The request is now assigned to project.
- The webpage you are viewing is trying to close the window.
- Unable to generate GL interface. Cannot find approved folder.
- You are no longer logged on. Please logon again.
- Your changes have not been saved. Are you sure you want to exit?
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Working With the List of Samples Submitting for Microarray Hybridization
- Adding a Sample to the List of Samples You Will Be Submitting for Microarray Hybridization
- Adding a sample to the list of samples you will be submitting for microarray hybridization that is similar to another sample already in the list
- Deleting a sample from the list of samples you will be submitting for microarray hybridization
- Deleting all of the samples currently included in the list of samples you will be submitting for microarray hybridization
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Working With the List of Hybridizations By Requests
- Adding a hybridization to the list of hybridizations you will be requesting
- Adding a hybridization to the list of hybridizations you will be requesting that is similar to another hybridization already in the list
- Deleting a hybridization from the list of hybridizations you will be requesting
- Deleting all of the hybridizations currently included in the list of hybridizations you will be requesting
- Editing a hybridization from the list of hybridizations you will be requesting
- Working with the list of hybridizations you will be requesting
- The hybs tab (submit microarray hybridization request window)
- The submit microarray hybridization request window
- Submitting a microarray hybridization request
- Microarray hybridization requests
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Specialized Role Topics
- Uploading a sample sheet
- Setting/changing the prices of a charge item
- Setting/changing the experiment type(s) associated with a price sheet
- Setting/changing the criteria by which a charge item will be applied to billing for an experiment
- The sample view tab (new experiment module)
- The hyb setup tab (new experiment request module)
- The hyb view tab (new experiment request module)
- The new project window
- The edit project window
- Adding a new project while you are entering a microarray hybridization request
- Editing an existing project while entering a microarray hybridization request
- Adding a new sample characteristic for annotation while submitting a sample hybridization
- Editing an existing sample characteristic for annotation while submitting a sample hybridization
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Guides
- User Guide
- Experiment orders
- The foundation of GNomEx
- Experiments at a glance
- Submitting a HiSeq or MiSeq experiment order
- ABI Capillary (Sanger) Sequencing
- Checking on experiment progress
- Copy and pasting into samples grid
- Posting outside experiment data
- iScan experiments
- Downloading and uploading your data
- The download files window
- Downloading large data sets
- Downloading chromatograms
- Fast data transfer from the command line
- Troubleshooting guide for downloading
- Launching FDT with Webstart
- Uploading your data
- Annotating your experiment
- Associating experiment files back to the samples
- Sample annotations
- Copy and paste for the samples grid
- Bulk sample sheet import
- Analysis and data tracks
- Create an analysis
- Data tracks
- Disk usage
- Configuring GNomEx
- Context-sensitive help
- Customize the billing account fields
- Dictionaries
- Seq lib protocols and barcode schemes
- Configuring HiSeq rapid mode sequencing options
- Developer Guide
- Installation Guide
- Configuring GNomEx for FDT
- Configuring GNomEx to use LDAP Authentication
- Compiling and Building
- The Database Schema
- GNomEx Open Source
- Developer Documents
- Illumina HiSeq Realtime Info — The Metrix Server
- FAQs
- Demo
Price categories appear as line items on a bill for an experiment. However, the text that appears on that line item, identifying what the charge is for and the actual price that is charged on that line item are based on what the user selected in the fields from the experiment order process on which that price category is based. Actual prices and line item text are linked with potential answers from those fields by entering a price and then, as criteria for that price, specifying the answers in those fields that would trigger that specific price (as opposed to another price in the same line item that would be triggered by a different set of answers). This is all controlled in the Manage Billing module. As you look at the prices data tree, you will notice that each of the prices (with their corresponding criteria) appear inside their associated category next to an icon that looks like a pair of dollar bills.
To add a new price criterion to the billing list:
1. Click on the Manage billing button in the Administration section of the application home page or the Billing button from among the buttons at the top of the window.
The billing window will appear.
2. Select the Prices tab in the pane on the left side of the window.
3. Find the price sheet and category within that price sheet to which you are trying to add the new price with its corresponding criteria in the list on the Prices tab. Click on the appropriate category to select it. (The categories are represented by folder icons.) If the appropriate price sheet and/or category does not exist in the list, they can be created — see Creating a New Price Sheet or Creating a New Price Category for instructions on how to do this.
Each price sheet represents a different type of experiment chosen on the first page of the order process. Within these price sheets, each line item that appears on the bill corresponds with a price category. As mentioned at the beginning of this topic, each price category points to specific fields from the billing order request process, and the price criteria within that category represent the amount that should be charged for each of the potential responses a person requesting an experiment might give in those fields — see also Creating a New Price Category. It is important, then, that you place your new price criterion in the correct category (not to mention the correct price sheet), or you will not be able to establish the criteria under which the price you are entering is to be applied, since you will not have access to the appropriate fields from the order process.
4. Click on the New price button beneath the prices list.
The Price window will appear. This is the window where you will enter the new pricing amount and description (name) as well as the criteria that will cause this charge to be triggered in the associated line item.
5. Enter the appropriate information about the new potential charge item, including a Name for the new price (the text that will appear in the line item on the bill), some Notes if applicable, the price to be charged including prices for units internal to HCI and External (if the pricing will be different) — see Setting/Changing the Price of a Charge Item — and criteria indicating under which conditions the charge item will be included on the bill for an experiment — see Setting/Changing the Criteria by Which a Charge Item will be Applied to Billing for an Experiment. The Active box should be checked in order for the new billing charge to actually be used in billing.
6. Click Save in the lower right corner of the Price window to save the new price and criteria.